Skills
Knowledge & Expertise
Dry lab
Metagenomics: Mothur, QIIME2, SourceTracker , Lefse (Biomarker Discovery), iVikodak, MEGAN, PICRUST, CLC Metagenomics Workbench, MGRAST
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Transcriptomics: BLAST2GO, QC tools, CLC genomics workbench, Galaxy Transcriptomic Packages, MapMan, GEO2R, EdgeR, DeSeq2, Salmon, Kalisto, Trinity, Bowtie, StringTie, Coding Potential Calculator 2(CPC2),GATK tools, MirDeep2 (miRNA and Deeps sequencing data)
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Structural Bioinformatics: Modeller, ITASSER server (Protein Modelling), MDWeb and CABS-FLEX (Simulation), Autodock, Hex, Patchdock (Molecular Docking), Ligplot, Dimplot (Interaction analysis), Aptamer designing
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Wet lab
Gas Chromatography and Mass Spectrometry, DNA isolation, RNA isolation, PCR, qPCR, Gel Electrophoresis, Hematological Parameters assay, Soil nutrient analysis, Plant Tissue Culture, Microbial Culture, Molecular Cloning
Field based work
Microcosm experiments, Setting up large-scale biodiversity experiments, Plant tissue and soil samples collection for transcriptomics and metagenomics. Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Phenotyping work and plant trait estimations.
Statistical Skills
ANOVA, Multivariate analysis, Application of Random Forest in microbiome data, Linear Mixed Models, Indicator species identification,
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