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Organized Desk

Publications

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Communicated or in preparation:

  1. Singh, P.K., Zheng, Y., Bolan, N., Abbott, L., Siddique, K.H.M., Mickan, B., Jenkins, S. Organic amendments enhance root microbiome resistance and wheat yield in drought. (In preparation)

  2. Singh, P.K., Martins, C., Jayaramaiah, R.H., Egidi, E., Macdonald, C., Reich, P.B., Delgado-Baquerizo, M., Singh, B.K. Plant phylogenetic relatedness explains host microbiome assembly. (Post revision Plant and Soil) preprint link: https://doi.org/10.64898/2025.12.17.695039

  3. Singh, P.K, Li, Y., Mathes, F., Abbott, L., Siddique, K.H.M., Waite, I., Jenkins, S. Long term organic amendments make bacterial community more resistant and fungal community more resilient towards heat stress. (Under review Soil Use and Management)

  4. Sharma, M., Pang , J., Ryan, M.H., Singh, P.K., Jenkins, S.N Mickan, B.S., Siddique, K.H.M. Chickpea exhibits greater efficiency in accessing phosphorus from wastewater- recovered struvite than wheat. (Under review Plant and Soil)

Peer Review Publications (Accepted and Published)

  1. Liu, H., Martins, C.S.C., Zhou, G., Jayaramaiah, R.H., Zhang, H., Singh, P.K., Yan, Z., Wang, J., Reich, P., Eisenhauer, N., Delgado-Baquerizo, M., Singh, B.K. The diversity of soil protists shapes ecosystem functions under climate change. (Accepted, Global Change Biology)

  2. Zhang, Z., Sharma, M., O’Connor, J., Singh.P.K., Waite, I., Mickan, B., Bolan, N., Lynette K Abbott, L., Jenkins, S., Gurung, SK. Co-application of struvite with phosphorus- solubilising bacteria enhances soil microbial activity and bioavailable phosphorus in alkaline soil. (Accepted  Journal of Environmental Management)

  3. Rajapakshe, O.L., Gurung, S.K., O’Connor, J., Mickan, B.S., Singh, P.K., Waite, I.S., De Mascio, C., Abbott, L.K., Jenkins, S.N. Lauric acid controls nitrogen release and inhibits nitrification in wastewater-enriched compost. (Journal of Environmental Management) https://doi.org/10.1016/j.jenvman.2025.126778

  4. Zheng, Y., Abbott, L., Bolan, N., Singh, P., Jenkins, S., Mickan, B. Evaluating the potential of digestate-loaded biochar in improving soil biological health and plant nutrition with less greenhouse gas emissions. (Environmental Pollution), http://dx.doi.org/10.1016/j.envpol.2025.126431

  5. Li, J., Liu, H., Wang, J., Macdonald, C., Singh, P., Cong, V., Klein, M., Baquerizo, M., Singh, B. Enhancing plant drought resistance through specific enrichments in plant microbiomes. (Cell Host & Microbe) https://doi.org/10.1016/j.chom.2025.05.002

  6. Ahmed, S., Singh, P., Middleton, J., Merritt, D., Jenkins, S., Nichols, P. Impact of seed maturation on the morphological characteristics, nutritional elements, microbiome community composition, and germinability of subterranean clover seeds. (Grass and Forage Science), https://doi.org/10.1111/gfs.12725

  7. Zarezadeh, S., Zheng, Y., Jenkins, S.N., Mercer, G.D., Moheimani, N.R., Singh, P.K., Mickan, B.S. (2025). Sustainable soil management in agriculture under drought stress: Utilizing waste-derived organic soil amendments and beneficial impacts on soil bacterial communities. Applied Soil Ecology, 105870. https://doi.org/10.1016/j.apsoil.2025.105870

  8. Gurung, S.K., Mickan, B.S., Middleton, J., Singh, P.K., Jenkins, S.N., Rengel, Z., Siddique, K.H.M., Solaiman, Z.M. (2024). Manure-derived black soldier fly frass enhanced the growth of chili plants (Capsicum annuum L.) and altered rhizosphere bacterial community. (Applied Soil Ecology), 105605. https://doi.org/10.1016/j.apsoil.2024.105605

  9. Birnbaum, C., Dearnaley, J., Egidi, E., Frew, A., Hopkins, A., Powell, J., Aguilar- Trigueros, C., Liddicoat, C., Albornoz, F., Heuck, M.K., Dadzie, F.A., Florence, L., Singh, P.K., Mansfield, T., Rajapaksha, K., Stewart, J., Rallo, P., Peddle, S.D., Chiarenza, G. (2023). Integrating soil microbial communities into fundamental ecology, conservation, and restoration: examples from Australia. (New Phytologist) 241(3), 974–981. https://doi.org/10.1111/nph.19440

  10. Singh, P.K., Egidi, E., Macdonald, C., Singh, B. (2023). Host selection has a stronger impact on leaf microbiome assembly compared to land-management practices. Journal of Sustainable Agriculture and Environment, 1–13. https://doi.org/10.1002/sae2.12043

  11. Sengupta, S., Singh, P.K., Ganguli, S. (2022). Insights into the core bacterial consortia of root endophytes in two cultivated varieties of rice in West Bengal. Environmental and Experimental Biology, 20, 205–218. http://doi.org/10.22364/eeb.20.19

  12. Ganguli, S., Singh, P.K., Pal, A. (2020). Transcriptome based identification of small RNA in plants: The need for robust prediction algorithms. In: Guleria, P. (Ed.), Plant Small RNA: Biogenesis, Regulation and Application (pp. 65–97). Elsevier. https://doi.org/10.1016/B978-0-12-817112-7.00004-3

  13. Kundu, A.*, Singh, P.K*., Dey, A., Ganguli, S., Pal, A. (2019). Complex molecular mechanisms underlying MYMIV-resistance in Vigna mungo revealed by comparative transcriptome profiling. Scientific Reports, 9, 8858. https://doi.org/10.1038/s41598-019-45383-w (equal contributions)

  14. Ghosh, U.D., Ghosh, M.M., Singh, P.K., Ganguli, S. (2019). Comparative profiling of the rhizospheric soil of Typha angustifolia L. from heavy metal contaminated and free sites reveals the selective abundance of γ-Proteobacteria and β-Proteobacteria. Indian Journal of Experimental Biology, 57(10), 733–740.

  15. Singh, P.K., Ganguli, S., Pal, A. (2018). Functions of long non-coding RNAs in plants: A riddle to explore. The Nucleus, 61(3), 261–272. https://doi.org/10.1007/s13237- 018-02494

  16. Singh, P.K., Ganguli, S., Pal, A. (2018). Screening and identification of putative long noncoding RNAs from transcriptome data of a high yielding blackgram (Vigna mungo) cv. T9. Data in Brief, 17, 459–462. https://doi.org/10.1016/j.dib.2018.01.043

  17. Singh, P.K., Patel, A., Ganguli, S., Pal, A. (2017). Molecular modeling and simulation of three important components of Plant-Pathogen Interaction cascade in Vigna mungo. Bioinformation, 13(10), 307–312. https://doi.org/10.6026/97320630013323

  18. Ganguli, S., Rahaman, S., Bera, A.R., Vishal, V., Malik, S., Roopalakshmi, K., Singh, P.K. (2017). Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian  Sunderbans. Genomics Data,  https://doi.org/10.1016/j.gdata.2017.09.001

  19. Sengupta, S., Ganguli, S., Singh, P.K. (2017). Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.). Genomics Data, 12, 41–43. https://doi.org/10.1016/j.gdata.2017.02.010

  20. Singh, P.K., Ghoshal, J.R., Ganguli, S., Basu, P., Vishal, V., Bera, A.R., Pandey, A., Banik, R. (2016). Identification of conserved regulatory motif signatures in human miRNA upstream regions. 2016 International Conference on Bioinformatics and Systems Biology (BSB), IEEE Xplore, 1–3. https://doi.org/10.1109/BSB.2016.7552128

  21. Ganguli, S., Gupta, M.K., Basu, P., Banik, R., Singh, P.K., Vishal, V., Bera, R.A., Hirak, J., Das, S.G. (2014). Intelligent Access to Sequence and Structure Databases (IASSD) – an interface for accessing information from major web databases. Bioinformation, 10(12), 760–762. https://doi.org/10.6026/97320630010764

  22. Singh, P.K., Banik, R., Chakraborty, H.J., Das, S.G., Ganguli, S., Datta, A. (2014). Identifying Overlapping Phylogenetic and Geographic Roots of HIV-1 Evolution through Computational Analyses. International Letters of Natural Sciences, 7, 23–29. https://doi.org/10.18052/www.scipress.com/ILNS.7.2

 

CONFERENCE ABSTRACTS AND PRESENTATIONS: (Post 2020)

  1. Singh, P.K., Zheng, Y., Bolan, N., Abbott, L., Siddique, K.H.M., Mickan, B., Jenkins, S. Organic amendments enhance root microbiome resistance and wheat yield in drought. Symposium for the Use of Organic Soil Amendments, 2025, Queensland , Australia (Poster presentation)

  2. Zaman, M., Shaukat, H., Singh, P.K., Abbott, L. Legacy effects of organic amendments and pastures on soil microbial communities. Symposium for the Use of Organic Soil Amendments, 2025, Queensland, Australia.

  3. Shaukat, H., Singh, P.K., Abbott, L., Jenkins, S. Impact of compost-fertiliser co- application on soil function and economic returns. Symposium for the Use of Organic Soil Amendments, 2025, Queensland, Australia.

  4. Lindongi, L.E., Shaukat, H., Singh, P.K., Jenkins, S., Mickan, B., Abbott, L. Synergistic effects of clay, hay residue, and fertilizer in sandy soil. Symposium for the Use of Organic Soil Amendments, 2025, Queensland, Australia.

  5. Singh, P.K., Martins, C., Jayaramaiah, R.H., Egidi, E., Macdonald, C., Reich, P.B., Delgado-Baquerizo, M., Singh, B.K. Plant phylogenetic relatedness explains host microbiome assembly, JAM 12, Annual Joint Academic Microbiology Seminars 2023. (Oral presentation)

  6. Singh, B.K., Martins, C., Jayaramaiah, R.H., Singh, P.K., Liu, H., Delgado-Baquerizo, M., Soil Biodiversity and Plant Diversity Interactions and Consequences for Ecosystem Functions and Resilience, Global Soil Biodiversity Conference 2023, Dublin, Ireland

  7. Singh, P.K., Egidi, E., Macdonald, C., Singh, B. Differential response of soil, root, and leaf microbiome of Eucalyptus saligna after decade-long management. ESA- SCBO 2022, the joint Conference of the Ecological Society of Australia and the Society for Conservation Biology Oceania. (Oral Presentation)

  8. Singh, P.K., Martins, C., Jayaramaiah, R.H., Egidi, E., Macdonald, C., Singh, B.K.. Deciphering the ecological processes that underpin microbial colonization of plants ASPS2021, Conference for the Australian Society

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