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Organized Desk

Publications

Communicated or in preparation:

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  1. Yunyun Zheng, Lynette Abbott, Nanthi Bolan, Pankaj Singh, Sasha Jenkins, Bede Mickan. Evaluating the potential of digestate-loaded biochar in improving soil biological health and plant nutrition with less greenhouse gas emissions (under review Environmental Pollution)

  2. Pankaj K Singh, Catarina Martins, Ramesha H Jayaramaiah, Eleonora Egidi, Catriona Macdonald, Peter B. Reich, Manuel Delgado-Baquerizo, Brajesh K Singh. Plant phylogenetic relatedness explain host microbiome assembly (under preparation)

  3. Jiayu Li, Hongwei Liu, Juntao Wang, Catriona Macdonald, Pankaj Singh, Vu Thanh Cong, Marcus Klein, Manuel Delgado-Baquerizo Brajesh Singh Enhancing plant drought resistance through specific enrichments in plant microbiomes (under review Cell, Host & Microbe)       

  4. Sunzid Ahmed, Pankaj Singh, Jen Middleton, David Merritt, Sasha Jenkins, Phillip Nichols. Impact of seed maturation on the morphological characteristics, nutritional elements, microbiome community composition, and germinability of subterranean clover seeds (under review Grass and Forage Science)

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Peer Review Publications (Accepted and Published)

 

  1. Somayeh Zarezadeh, Yunyun Zheng, Sasha N. Jenkins, George D. Mercer, Navid R. Moheimani, Pankaj K Singh, Bede S. Mickan. Sustainable soil management in agriculture under drought stress: Utilising waste-derived organic soil amendments and beneficial impacts on soil bacterial. Applied Soil Ecology.  https://doi.org/10.1016/j.apsoil.2025.105870

  2. Sun Kumar Gurung, Bede S. Mickan, Jen Middleton, Pankaj K. Singh, Sasha N. Jenkins, Zed Rengel, Kadambot H.M. Siddique, and Zakaria M. Solaiman: Manure-derived black soldier fly frass enhanced the growth of chili plants (Capsicum annuum L.) and altered rhizosphere bacterial community. Applied Soil Ecology. https://doi.org/10.1016/j.apsoil.2024.105605 

  3. Christina Birnbaum, John Dearnaley, Eleonora Egidi, Adam Frew, Anna Hopkins, Jeff Powell, Carlos Aguilar-Trigueros , Craig Liddicoat , Felipe Albornoz , Meike K. Heuck ,Frederick A. Dadzie, Luke Florence , Pankaj Kumar Singh , Tomas Mansfield , Kumari Rajapaksha , Jana Stewart , Paola Rallo , Shawn D. Peddle, Giancarlo Chiarenza. Integrating soil microbial communities into fundamental ecology, conservation, and restoration: examples from Australia The New Phytologist, 241(3), 974-981. https://doi.org/10.1111/nph.19440

  4. Pankaj K. Singh, Eleonora Egidi, Catriona Macdonald, Brajesh Singh: Host selection has a stronger impact on leaf microbiome assembly compared to land-management practices. Journal of Sustainable Agriculture and Environment. 2023 ;1– 13. https://doi.org/10.1002/sae2.12043

  5. Subhadipa Sengupta, Pankaj K Singh, Sayak Ganguli: Insights into the core bacterial consortia of root endophytes in two cultivated varieties of rice in West Bengal, Environmental and Experimental Biology (2022) 20: 205–218, DOI: http://doi.org/10.22364/eeb.20.19

  6. Sayak Ganguli, Pankaj K Singh and Amita Pal: Transcriptome based identification of small RNA in plants: The need for robust prediction algorithms (Book Chapter) In Plant Small RNA: Biogenesis, Regulation and Application, edited by Praveen Guleria, Elsevier 65–97 (Academic Press, 2020). doi: https://doi.org/10.1016/B978-0-12-817112-7.00004-3.

  7. Anirban Kundu*, Pankaj Kumar Singh*, Avishek Dey, Sayak Ganguli, Amita Pal: Complex molecular mechanisms underlying MYMIV-resistance in Vigna mungo revealed by comparative transcriptome profiling , Scientific Reports, volume 9, Article number: 8858 (2019) ,DOI: https://doi.org/10.1038/s41598-019-45383-w (* Equal contribution)

  8. Upal Das Ghosh, Mahashweta Mitra Ghosh, Pankaj Kumar Singh, Sayak Ganguli: Comparative profiling of the rhizospheric soil of Typha augustifolia L from heavy metal contaminated and free sites reveals the selective abundance of γ -Proteobacteria and β-Proteobacteria , Indian Journal of Experimental Biology 57(10):733-740

  9. Pankaj Kumar Singh, Sayak Ganguli, Amita Pal: Functions of long non-coding RNAs in plants: a riddle to explore.  Nucleus (India) 10/2018;DOI:  https://doi.org/10.1007/s13237-018-02494

  10. Pankaj Kumar Singh, Sayak Ganguli, Amita Pal: Screening and Identification of putative long non coding RNAs from transcriptome data of a high yielding blackgram (Vigna mungo, Cv. T9). Data in Brief 04/2018; 17(2018):459-462., https://doi.org/10.1016/j.dib.2018.01.043

  11.  Pankaj Kumar Singh, Anju Patel, Sayak Ganguli, Amita Pal: Molecular modeling and simulation of three important components of Plant Pathogen Interaction cascade in Vigna mungo. Bioinformation 10/2017; 13(10)., https://doi.org/10.6026/97320630013323

  12. Sayak Ganguli, Sabdar Rahaman, Abhishek R. Bera, Vineet Vishal, Shelvia Malik, K. Roopalakshmi, Pankaj K. Singh: Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans. Genomics Data 09/2017; 14(C)., https://doi.org/10.1016/j.gdata.2017.09.001

  13. Subhadipa Sengupta, Sayak Ganguli, Pankaj K Singh: Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.). Genomics Data 02/2017; 12(C)., https://doi.org/10.1016/j.gdata.2017.02.010

  14. Pankaj Kumar Singh, Jayita Roy Ghoshal, Sayak Ganguli, Protip Basu, Vineet Vishal, Abhisek Ranjan Bera, Abhaydeep Pandey, Rahul Banik: Identification of conserved regulatory motif signatures in human miRNA upstream regions. IEEE Xplore, In: 2016 International Conference on Bioinformatics and Systems Biology (BSB). 2016. p. 1–3. https://doi.org/10.1109/BSB.2016.7552128

  15.  Sayak Ganguli, Manoj Kumar Gupta, Protip Basu, Rahul Banik, Pankaj Kumar Singh, Vineet Vishal, Ranjan Abhisek, Bera, Jyoti Hirak, Chakraborty, Gopal Sasti, Das: Intelligent Access to Sequence and Structure Databases (IASSD) – an interface for accessing information from major web databases. Bioinformation 12/2014; 10(12):760-762., https://doi.org/10.6026/97320630010764

  16. Pankaj Kumar Singh, Rahul Banik, Hirak Jyoti Chakraborty, Sasti Gopal Das, Sayak Ganguli, Abhijit Datta: Identifying Overlapping Phylogenetic and Geographic Roots of HIV – 1 Evolution through Computational Analyses. International Letters of Natural Sciences 2(2014) 23-29, https://doi.org/10.18052/www.scipress.com/ILNS.7.23

  17. Aruna K Singh, Pankaj Singh, Anirban Dey, Akhilesh Mishra, Gayetri Dewangan, A K Chakraborty, Tapan K Mandal: Effect of flumethrine on hematological and biochemical changes in rats. Exploratory Animal and Medical Research. Res., Vol. 1, Issue - 2, 2012. p- 131-136

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