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Organized Desk

Publications

Articles

Communicated or in preparation:

 

  1. Somayeh Zarezadeh, Sasha N. Jenkins, Pankaj K Singh, Yunyun Zheng, Navid R. Moheimani, Bede S. Mickan: Sustainable soil management in agriculture: Effects of waste-derived soil amendments on soil bacterial communities and nutrient cycling under drought stress (under review Journal of Environmental Management)

    2. Pankaj K Singh, Catarina Martins, Ramesha H Jayaramaiah, Eleonora Egidi, Galaxy Qui, Chao Xiong, Bruna                       Batista, Catriona Macdonald, Peter Reich, Manuel Delgado-Baquerizo, Brajesh K Singh: Plant phylogenetic                           relatedness explain host microbiome assembly (in preparation)

    3.  Sunzid Ahmed, Pankaj K. Singh, Jen Middleton, David Merritt, Sasha Jenkins, Phillip Nichols
   Impact of seed maturation on the morphological characteristics, nutritional elements, microbiome community                    composition, and germinability of subterranean clover seeds (in preparation)

    4.  Manish Sharma, Jiayin Pang, Megan Ryan, Sasha Jenkins, Panaj Kumar Singh, Bede Mickan, Kadambot  Siddique:         Chickpea exhibits greater efficiency in accessing phosphorus from wastewater recovered struvite than
    wheat (under review Science of the Total Environment)

   5. Sun Kumar Gurung, Bede S. Mickan, Jen Middleton, Pankaj K Singh, Sasha N Jenkins, Zed Rengel,  Kadambot H.M.          Siddique, Zakaria M. Solaiman: Manure-derived black soldier fly frass enhanced the growth of chilli plants (Capsicum         annuum L.) and altered rhizosphere bacterial community (under review Applied Soil Ecology)

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Peer Review Publications (Accepted and Published)

 

  1. Christina Birnbaum, John Dearnaley , Eleonora Egidi , Adam Frew , Anna Hopkins , Jeff Powell , Carlos Aguilar-Trigueros , Craig Liddicoat , Felipe Albornoz , Meike K. Heuck , Frederick A. Dadzie, Luke Florence , Pankaj Kumar Singh , Tomas Mansfield , Kumari Rajapaksha , Jana Stewart , Paola Rallo , Shawn D. Peddle, Giancarlo Chiarenza: Integrating soil microbial communities into fundamental ecology, conservation, and restoration: examples from Australia. New Phytologist. https://doi.org/10.1111/nph.19440

  2. Pankaj K. Singh, Eleonora Egidi, Catriona Macdonald, Brajesh Singh: Host selection has a stronger impact on leaf microbiome assembly compared to land-management practices. Journal of Sustainable Agriculture and Environment. 2023 ;1– 13.  https://doi.org/10.1002/sae2.12043

  3. Subhadipa Sengupta, Pankaj K Singh, Sayak Ganguli: Insights into the core bacterial consortia of root endophytes in two cultivated varieties of rice in West Bengal, Environmental and Experimental Biology (2022) 20: 205–218, DOI: http://doi.org/10.22364/eeb.20.19

  4. Sayak Ganguli, Pankaj K Singh and Amita Pal :Transcriptome based identification of small RNA in plants: The need for robust prediction algorithms (Book Chapter) In Plant Small RNA: Biogenesis, Regulation and Application, edited by Praveen Guleria, Elsevier 65–97 (Academic Press, 2020). doi: https://doi.org/10.1016/B978-0-12-817112-7.00004-3.

  5. Anirban Kundu*, Pankaj Kumar Singh*, Avishek Dey, Sayak Ganguli, Amita Pal: Complex molecular mechanisms underlying MYMIV-resistance in revealed by comparative transcriptome profiling , Scientific Reports, volume 9, Article number: 8858 (2019) ,DOI: 10.1038/s41598-019-45383-w (* Equal contribution)

  6. Upal Das Ghosh, Mahashweta Mitra Ghosh, Pankaj Kumar Singh, Sayak Ganguli: Comparative profiling of the rhizospheric soil of Typha augustifolia L from heavy metal contaminated and free sites reveals the selective abundance of γ -Proteobacteria and β-Proteobacteria , Indian Journal of Experimental Biology 57(10):733-740

  7. Pankaj Kumar Singh, Sayak Ganguli, Amita Pal: Functions of long non-coding RNAs in plants: a riddle to explore.  Nucleus (India) 10/2018;DOI:10.1007/s13237-018-02494

  8. Pankaj Kumar Singh, Sayak Ganguli, Amita Pal: Screening and Identification of putative long non coding RNAs from transcriptome data of a high yielding blackgram (Vigna mungo), Cv. T9. Data in Brief 04/2018; 17(2018):459-462.,

  9.  Pankaj Kumar Singh, Anju Patel, Sayak Ganguli, Amita Pal: Molecular modeling and simulation of three important components of Plant Pathogen Interaction cascade in Vigna mungo. Bioinformation 10/2017; 13(10)., DOI:10.6026/97320630013323

  10. Sayak Ganguli, Sabdar Rahaman, Abhishek R. Bera, Vineet Vishal, Shelvia Malik, K. Roopalakshmi, Pankaj K. Singh: Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans. Genomics Data 09/2017; 14(C).,

  11. Subhadipa Sengupta, Sayak Ganguli, Pankaj K Singh: Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.). Genomics Data 02/2017; 12(C)., DOI:10.1016/j.gdata.2017.02.010

  12. Sayak Ganguli, Olivia Das, Abhisek Ranjan Bera, Pankaj K Singh, Protip Basu, Vineet Vishal, Sohini Gupta: West Bengal Butterfly Biodiversity Database-a compendium of butterfly biodiversity with information regarding the habitat and status of individual identified species of butterflies of West Bengal, Asian Journal of Conservation Biology, December 2016. Vol. 5 No. 2, pp. 90-93

  13. Pankaj Kumar Singh, Jayita Roy Ghoshal, Sayak Ganguli, Protip Basu,Vineet Vishal, Abhisek Ranjan Bera, Abhaydeep Pandey, Rahul Banik: Identification of conserved regulatory motif signatures in human miRNA upstream regions. IEEE Xplore, In: 2016 International Conference on Bioinformatics and Systems Biology (BSB). 2016. p. 1–3.

  14.  Sayak Ganguli, Manoj Kumar Gupta, Protip Basu, Rahul Banik, Pankaj Kumar Singh, Vineet Vishal, Ranjan Abhisek, Bera, Jyoti Hirak, Chakraborty, Gopal Sasti, Das: Intelligent Access to Sequence and Structure Databases (IASSD) – an interface for accessing information from major web databases. Bioinformation 12/2014; 10(12):760-762., DOI:10.6026/97320630010764

  15. Pankaj Kumar Singh, Rahul Banik, Hirak Jyoti Chakraborty, Sasti Gopal Das, Sayak Ganguli, Abhijit Datta: Identifying Overlapping Phylogenetic and Geographic Roots of HIV – 1 Evolution through Computational Analyses. International Letters of Natural Sciences 2(2014) 23-29,DOI:10.18052/www.scipress.com/ILNS.7.23

  16. Aruna K Singh, Pankaj Singh, Anirban Dey, Akhilesh Mishra, Gayetri Dewangan, A K Chakraborty, Tapan K Mandal: Effect of flumethrine on hematological and biochemical changes in rats. Exploratory Animal and Medical Research. Res., Vol. 1, Issue - 2, 2012. p- 131-136

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